Quinolone-resistant Escherichia coli at the interface between humans, poultry and their shared environment- a potential public health risk

Aworh, Mabel Kamweli; Kwaga, Jacob K. P.; Hendriksen, Rene S.; Okolocha, Emmanuel C.; Harrell, Erin; Thakur, Siddhartha

doi:10.1186/s42522-023-00079-0

One Health Outlook

Table 4 Distribution of PMQR genes and QRDR mutations among 75 NAlidixic acid resistant Escherichia coli isolates

From: Quinolone-resistant Escherichia coli at the interface between humans, poultry and their shared environment- a potential public health risk

	PMQR genes			Mutations to the QRDRs
Sample ID	*qnrS*	*qnrB*	*aac(6')-Ib-cr*	gyrA	parC	parE	pmrB	Location	Category
ma 001				S83L	S80I			Market	Chicken
ma 003				S83L				Market	Environment
ma 008				S83L			V161G	Market	Chicken
ma 010	qnrS			S83L				Market	Chicken
ma 013	qnrS			S83L + D87N	S80I	S458A		Market	Chicken
ma 021	qnrS			S83L + D87N	S80I	S458A		Market	Environment
ma 024				S83L				Market	Environment
ma 038				S83L				Market	Human
ma 051	qnrS							Market	Environment
ma 055	qnrS			S83L				Market	Chicken
ma 069				S83A				Market	Human
ma 077								Market	Human
ma 078	qnrS			S83L				Market	Human
ma 079		qnrB						Market	Human
ma 088		qnrB						Market	Human
ma 105				S83L				Farm	Human
ma 120				S83L				Farm	Environment
ma 121								Farm	Chicken
ma 124	qnrS							Farm	Human
ma 125	qnrS	qnrB						Farm	Human
ma 126				S83L + D87N	S80I	L416F		Farm	Human
ma 138				S83L + D87N	S80I			Market	Human
ma 140				S83L + D87N	S80I + A56T			Market	Chicken
ma 143				S83L + D87N	S80I			Farm	Human
ma 146	qnrS			S83L + D87N	S80I + E84G			Farm	Chicken
ma 158	qnrS							Farm	Environment
ma159	qnrS							Farm	Human
ma162	qnrS							Farm	Chicken
ma 163	qnrS							Farm	Environment
ma 167								Farm	Chicken
ma 168	qnrS							Farm	Chicken
ma 172	qnrS							Farm	Human
ma 174	qnrS	qnrB						Farm	Chicken
ma 175		qnrB						Farm	Environment
ma 179	qnrS	qnrB						Farm	Chicken
ma 182				S83L + D87N	S80I	S458A		Farm	Environment
ma 183								Farm	Human
ma 197	qnrS			S83L + D87N	A56T + S80I + E84G			Farm	Chicken
ma 218	qnrS			S83L + D87N	S80I			Farm	Environment
ma 233	qnrS			S83L	S80I			Farm	Environment
ma 234	qnrS			S83L + D87N	S80I			Farm	Chicken
ma 236	qnrS			S83L + D87N	S80I	S458A		Farm	Human
ma 237	qnrS							Farm	Human
ma 238	qnrS			S83L	S80I			Farm	Chicken
ma 241		qnrB						Farm	Human
ma 244	qnrS							Farm	Environment
ma 245	qnrS		aac(6')-Ib-cr					Market	Chicken
ma 246		qnrB	aac(6')-Ib-cr	S83L + D87N	S80I			Market	Chicken
ma 249	qnrS	qnrB		S83L				Market	Environment
ma 252	qnrS	qnrB						Farm	Environment
ma 253	qnrS			S83L + D87N	S80I			Farm	Environment
ma 257								Market	Human
ma 261				S83L + D87N	S80I	L416F		Market	Human
ma 263	qnrS			S83L + D87N	S80I	L416F		Farm	Chicken
ma 281	qnrS			S83L				Farm	Chicken
ma 282	qnrS			S83L				Farm	Environment
ma 286								Farm	Human
ma 287	qnrS							Farm	Chicken
ma 289	qnrS							Farm	Environment
ma 293	qnrS							Farm	Environment
ma 294				S83L				Farm	Chicken
ma 305				S83L + D87N	S80I + A56T			Farm	Chicken
ma 312				S83L + D87N	S80I + A56T			Farm	Chicken
ma 314								Farm	Human
ma 330				S83L + D87N	S80I	S458A		Farm	Chicken
ma 331	qnrS			S83L + D87Y	S80I	S458A		Farm	Chicken
ma 367	qnrS							Farm	Environment
ma 370	qnrS							Farm	Chicken
ma 384	qnrS				A56T			Farm	Human
ma 390	qnrS				A56T			Farm	Human
ma 392					S57T	I355T		Farm	Chicken
ma 415		qnrB		S83L + D87N	S80I			Farm	Human
ma 420	qnrS	qnrB			A56T			Farm	Human
ma 421				S83L				Farm	Human
ma 422	qnrS							Farm	Chicken

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