Fig. 1From: Typing methods based on whole genome sequencing dataWheel of tools and supported methods. Provided methods: Antimicrobial resistance gene detection (AMR), Virulence factor search (Virulence), Serotyping and Phylogeny (highlighted in black/grey) by selected tools (BIGSdb, Bionumerics, CGE, COMPARE, PATRIC, EnteroBase, INNUENDO, IRIDA, NCBI Pathogens, PathogenWatch and SeqSphere). Organisms for which a methodology is supported by a tool are specified. For phylogeny, the underlying methods are mentioned. White fields indicate that functionality is not supported by the respective platform. ML = Maximum LikelihoodBack to article page