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Fig. 4 | One Health Outlook

Fig. 4

From: Optimizing open data to support one health: best practices to ensure interoperability of genomic data from bacterial pathogens

Fig. 4

Plot of mean coverage (as reported by SKESA v. 2.2) vs number of contigs for a random sample of isolates with Illumina sequence data available from NCBI Pathogen Detection portal (n = 10,000 for all species except V. parahaemolyticus where n = 1414 due to smaller number of samples). The smoothed line was generated using generalized additive smoothing in R. Assembly quality, as measured by a decrease in the number of contigs, generally increases with increasing coverage

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One Health Outlook

ISSN: 2524-4655