From: Evaluation of WGS-subtyping methods for epidemiological surveillance of foodborne salmonellosis
 | pSA19992307 (NZ_CP030208) | pSE81–1705 (NZ_CP018654) | Plasmid: 4 (LN829404) | pATCC39184 (NZ_CP019180) | pSDU2-USMARC-69807 (NZ_CP032381) | Plasmid: 3 (NZ_LN868945) |
---|---|---|---|---|---|---|
Outbreak strains: | ||||||
902,637 | Present | Present | Present | Absent | Absent | Absent |
MF036933 | Present | Present | Present | Absent | Absent | Absent |
MF036980 | Present | Present | Present | Absent | Absent | Absent |
517,138 | Present | Present | Present | Absent | Absent | Absent |
MF6869 | Present | Present | Present | Absent | Absent | Absent |
M26560 | Present | Present | Present | Absent | Absent | Absent |
MF7067 | Present | Present | Present | Absent | Absent | Absent |
MF7174 | Present | Present | Present | Absent | Absent | Absent |
40,986 | Present | Present | Present | Absent | Absent | Absent |
Non-outbreak strains: | ||||||
MF038630 | Present | Present | Present | Absent | Absent | Absent |
M1314220 | Absent | Present | Present | Present | Absent | Absent |
M54827 | Present | Present | Present | Absent | Absent | Absent |
MB12371 | Absent | Present | Present | Present | Absent | Absent |
MF5994 | Present | Present | Present | Absent | Absent | Absent |
MB7978 | Present | Present | Present | Absent | Absent | Absent |
B289223 | Present | Present | Present | Absent | Absent | Absent |
11F310 | Present | Present | Present | Absent | Absent | Absent |
MB98550 | Present | Present | Present | Absent | Absent | Absent |
MF8409 | Present | Present | Present | Absent | Absent | Absent |
W151R0 | Present | Present | Present | Absent | Absent | Absent |
B261193 | Absent | Present | Present | Absent | Present | Absent |
MP015199F | Present | Present | Present | Absent | Absent | Absent |
Food strains: | Absent | |||||
a2014LSAL02972 | Present | Present | Absent | Absent | Absent | Present |
a2015LSAL00258 | Present | Present | Absent | Absent | Absent | Present |