Table 4 Number of spacers within CRISPRs loci in all Salmonella Typhimurium strains analysed in this study
From: Evaluation of WGS-subtyping methods for epidemiological surveillance of foodborne salmonellosis
Strain ID | Spacers No. (Velvet & SPAdes) | ||
|---|---|---|---|
Food strains: | |||
aH133060375 | 9 | 13 | 9 |
aH133060376 | 9 | 13 | 9 |
aH133060377 | 9 | 13 | 9 |
aH133060378 | 9 | 13 | 9 |
Outbreak strains: | |||
 H133300609 | 9 | 13 | 9 |
 H132940743 | 9 | 13 | 9 |
 H132940744 | 9 | 13 | 9 |
 H132940745 | 9 | 13 | 9 |
 H132940746 | 9 | 13 | 9 |
 H132940748 | 9 | 13 | 9 |
 H132940749 | 9 | 13 | 9 |
 H132940750 | 9 | 13 | 9 |
 H132940751 | 9 | 13 | 9 |
 H132940753 | 13 | 9 | 9 |
 H132940754 | 9 | 13 | 9 |
 H132940756 | 9 | 13 | 9 |
 H133000645 | 9 | 13 | 9 |
 H133000654 | 9 | 13 | 9 |
Non-outbreak strains | |||
 H121600325 | 9 | 13 | 9 |
 H122020454 | 9 | 13 | 9 |
 H122720573 | 9 | 13 | 9 |
 H123020544 | 9 | 13 | 9 |
 H123920661 | 9 | 13 | 9 |
 H124860455 | 9 | 13 | 9 |
 H132780266 | 9 | 13 | 9 |
 H132920685 | 9 | 13 | 9 |
 H132960590 | 9 | 13 | 9 |
 H132980531 | 9 | 13 | 9 |
 H133040470 | 9 | 13 | 9 |
 H133260293 | 9 | 13 | 9 |
 H133400611 | 9 | 13 | 9 |